The detailed information of tRNA gene sequence


Sequence ID>A178000394
Genome IDCP006867
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus islandicus DSM 13165 [CP006867]
Start position on genome 1040558
End posion on genome 1040412
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gagatatggt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGTCGGGGGTTCAAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
caccccctac
Secondary structure (Cloverleaf model)
>A178000394	Trp	CCA
                   t      ACCA caccccctac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=70 (in A-loop)
ACGTACTACGGGTCTGGTAGAGCCGAAAGGCGATGATCGTCGTCTGGAGCGTTAAGACCCGGGAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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