The detailed information of tRNA gene sequence


Sequence ID>A178000401
Genome IDCP006977
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus acidocaldarius SUSAZ [CP006977]
Start position on genome 49356
End posion on genome 49221
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gatcgataaT
tRNA gene sequence 
GGGCCCATAGCTCAGCCAGGTAGAGTGCCGGGCTCCAGACCCGGTGGTCCGGGGTTCAAG
TCCCCGTGGGCCCATta
Downstream region at tRNA end position 
tttttaattt
Secondary structure (Cloverleaf model)
>A178000401	Trp	CCA
                   T      ATta tttttaattt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C G G G G     C
    A       | | | +                 T T
    G       G A G T
      G T A        G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=60 (in A-loop)
ATGAGCTGCATTGGGTCTTAAGACCCCCTTGTTGGGGGATGATATAGATCTGGAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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