The detailed information of tRNA gene sequence


Sequence ID>A178000411
Genome IDCP007026
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopelagicus brevis CN25 [CP007026]
Start position on genome 374958
End posion on genome 375058
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
atcatttgtt
tRNA gene sequence 
GGAGGGGTATCGAAGCCTGGTCAACCGAGAAGGACTCAAGATCCTTTCTCTTAGGAGTTC
GTGGGTTCGAATCCCACCCCCTCCACat
Downstream region at tRNA end position 
cttttcaaaa
Secondary structure (Cloverleaf model)
>A178000411	Leu	CAA
                   t      ACat cttttcaaaa
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  T         A G C T       G T G G G     C
  G           | | |                 T T
  G         C C G A
    T C A A        G     TCTCTTAGGAGTTC
                    A - T
                    A - T
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=15 (in A-loop)
ATCATCGTATAAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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