The detailed information of tRNA gene sequence


Sequence ID>A178000493
Genome IDCP009518
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcoides methylutens MM1 [CP009518]
Start position on genome 920839
End posion on genome 920935
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
taagcttaaa
tRNA gene sequence 
GGGCTCGTAGGGTAGCCAGGATATCCTCATGGGCTTCGAACCCATTGACCCGTGTTCGAA
TCGCGGCGGGCCCGtat
Downstream region at tRNA end position 
cttttaattt
Secondary structure (Cloverleaf model)
>A178000493	Arg	TCG
                   a      Gtat cttttaattt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        A      | | | + |     G
  A         T G G G       C C G T G     C
  G           | | +                 T T
  G         T C C T
    A T A          C     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
intron: position=38, length=23 (in A-loop)
AGTGGAAAATATTCCTCGAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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