The detailed information of tRNA gene sequence


Sequence ID>A178000513
Genome IDCP009961
Search identical group
Phylum/ClassThermoproteota
SpeciesInfirmifilum uzonense 1807-2 [CP009961]
Start position on genome 1330814
End posion on genome 1330714
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
tgctttgagg
tRNA gene sequence 
GGGCCGGTAGCTCAGCCAGGTAGAGCACCCGGCTCATAACCGGGGGGTCCCGGGTTCAAG
TCCCGGCCGGCCCACtt
Downstream region at tRNA end position 
tagggttacg
Secondary structure (Cloverleaf model)
>A178000513	Met	CAT
                   g      ACtt tagggttacg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    A       | | | |                 T T
    G       G A G C
      G T A        A     GGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=26 (in A-loop)
AACAGGCTCAATCGGCCTGTTTGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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