The detailed information of tRNA gene sequence


Sequence ID>A178000521
Genome IDCP010529
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHaloarcula sp. CBA1115 [CP010529]
Start position on genome 2993306
End posion on genome 2993486
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gccggagtgc
tRNA gene sequence 
GGGGTCGTGGCCTAGTCCGGGAAGGCGGCTGACTCCAGATCAGCCGATCGGGGGTTCAAA
TCCCTCCGACCCCAttt
Downstream region at tRNA end position 
cctgccgcga
Secondary structure (Cloverleaf model)
>A178000521	Trp	CCA
                   c      Attt cctgccgcga
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C T C C C     A
      T G A        G      | + | | |     A
    C       T C C G       G G G G G     C
    C       | | | |                 T T
    G       A G G C
      G G A        G     CGATC
                    G - C
                    C - G
                    T - A
                    G - C
                    A - T
                  C       A
                  T       G *
                    C C A
intron: position=38, length=107 (in A-loop)
AGGCCACGCGCCTGGGACGACACTTCGAGGGCTGATATACTGAGCGGCCGGCTGATCACCGGTTCGCGAC
GATGACCCTCTGGAGTTCCGAGGCGCAGGACGGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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