The detailed information of tRNA gene sequence


Sequence ID>A178000534
Genome IDCP011056
Search identical group
Phylum/ClassThermoproteota
SpeciesSaccharolobus solfataricus SARC-C [CP011056]
Start position on genome 1057222
End posion on genome 1057082
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
attaagtaaT
tRNA gene sequence
GGGCCCGTAGCTTAGCCAGGTAGAGTACTGGGCTCCAGACCCAGTGGTCGCGGGTTCGAG
TCCCGCCGGGCCCATac
Downstream region at tRNA end position
atctaaacga
Secondary structure (Cloverleaf model)
>A178000534	Trp	CCA
                   T      ATac atctaaacga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     C G C C C     A
      C G A        A      | | | | |     G
    C       T T C G       G C G G G     C
    A       + | | +                 T T
    G       G A G T
      G T A        A     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=65 (in A-loop)
ATATTAATGCTAGACATTGGGTCTTAAGACCCTTTATGGGGATGAAGTGTATCTGGAGAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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