The detailed information of tRNA gene sequence


Sequence ID>A178000655
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 319238
End posion on genome 319050
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
gtggctcaaa
tRNA gene sequence 
GCCGGGGTAGCCAAGTGGCCAAAGGCGACGGACTCAAGATCCGTTCCCGCAGGGGTTCGC
AAGTTCAAATCTTGCCCCCGGCAtag
Downstream region at tRNA end position 
aagtttactg
Secondary structure (Cloverleaf model)
>A178000655	Leu	CAA
                   a      Atag aagtttactg
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G T T C     A
      T G A        A      | | | | |     A
    G       A C C G       G C A A G     C
    G         | | |                 T T
    C       A G G C
      C A A        G     TCCCGCAGGGGTTC
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C A A
intron: position=38, length=106 (in A-loop)
AACAACTAGTTCCTCTGGAAGAGGGCTTTGACAAGAGAGAGCTTCATGCTTCCTTTACAGTAAAGTTGCT
GTAAAAGCTTTCCAGGGCGAAAGCTGTGGCTGAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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