The detailed information of tRNA gene sequence


Sequence ID>A178000658
Genome IDCP012986
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNanohaloarchaea archaeon SG9 [CP012986]
Start position on genome 630803
End posion on genome 630943
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
cctctgttaa
tRNA gene sequence 
GGGCTCTTAGTTCAGTCTGGCAGAACGCCTGCTTCGCAAGCAGGAGGCCTCGGGTTCAAA
TCCCGAAGGGTCCAaat
Downstream region at tRNA end position 
ttatttcgtc
Secondary structure (Cloverleaf model)
>A178000658	Ala	CGC
                   a      Aaat ttatttcgtc
                     G - C
                     G - C
                     G + T
                     C - G
                     T + G
                     C - G
                     T - A          T A
                    T     A G C C C     A
      T G A        A      | | | | |     A
    C       C T T G       T C G G G     C
    T       | | | |                 T T
    G       G A A C
      G C A        G     AGGCC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A *
                    C G C
intron: position=38, length=67 (in A-loop)
ACACCACTTGCTTGAATCTAGGTGAAAGCTGGAGGTTAGAGAAGAACAAAGATCTTCAAAGCGGAAT
Intron
Comment/Decision
Genome/Seq. Info.-

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