The detailed information of tRNA gene sequence


Sequence ID>A178000671
Genome IDCP016070
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalodesulfurarchaeum formicicum HTSR1 [CP016070]
Start position on genome 467903
End posion on genome 468044
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ccgggcgtga
tRNA gene sequence 
GCCCGGGTGGCTTAGTGGTCATAGCGCCGCACTCATAATGCGGAGGTCGAGGGTTCGAAC
CCCTCCCCGGGCACtt
Downstream region at tRNA end position 
ttaactgtcc
Secondary structure (Cloverleaf model)
>A178000671	Met	CAT
                   a      ACtt ttaactgtcc
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          C A
                    T     C T C C C     A
      T G A        G      | | | | |     G
    G       T T C G       G A G G G     C
    G         | | |                 T T
    T       T A G C
      C A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=68 (in A-loop)
GGGTTTCGAGATTCGGTGCGGCCATCGGTGGCTCGCATCTCAGGTCGACCGAGCCTTGGACCTGGGAC
Intron
Comment/Decision
Genome/Seq. Info.-

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