The detailed information of tRNA gene sequence


Sequence ID>A178000686
Genome IDCP017006
Search identical group
Phylum/ClassThermoproteota
SpeciesSulfolobus sp. A20 [CP017006]
Start position on genome 975844
End posion on genome 975982
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
attaaaccgT
tRNA gene sequence 
GGGCCCGTAGCTTAGCAAGGTAGAGTGCTGGGCTCCAGACCCAGTGGTCCGGGGTTCAAG
TCCCCGCGGGCCCATac
Downstream region at tRNA end position 
attttgatgg
Secondary structure (Cloverleaf model)
>A178000686	Trp	CCA
                   T      ATac attttgatgg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G C C C C     A
      C G A        A      | | | | |     A
    A       T T C G       C G G G G     C
    A       + | | +                 T T
    G       G A G T
      G T A        G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=63 (in A-loop)
ATATGTGCTATACATTGGGTCAGCCGACCTTTCCTAGGGATGAGGTATATCTGGAGAGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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