The detailed information of tRNA gene sequence


Sequence ID>A178000708
Genome IDCP020477
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus manzaensis YN-25 [CP020477]
Start position on genome 1411107
End posion on genome 1411195
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
ttattagaaT
tRNA gene sequence 
GCCGCAGTAGCTCAGCTGGAAGAGCGCCCGGCTGTTAACCGGGCGGTCAGAGGTTCGAAT
CCTCTCTGCGGCGTgt
Downstream region at tRNA end position 
tgctccaatt
Secondary structure (Cloverleaf model)
>A178000708	Asn	GTT
                   T      GTgt tgctccaatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     A - T
                     G - C          T A
                    T     T C T C C     A
      C G A        A      | | | | |     G
    T       C T C G       A G A G G     C
    G       | | | |                 T T
    G       G A G C
      A A          G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
intron: position=38, length=14 (in A-loop)
AACCCTTTGCAGTA
Intron
Comment/Decision
Genome/Seq. Info.-

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