The detailed information of tRNA gene sequence


Sequence ID>A178000715
Genome IDCP020477
Search identical group
Phylum/ClassThermoproteota
SpeciesAcidianus manzaensis YN-25 [CP020477]
Start position on genome 2052005
End posion on genome 2052101
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position
catttcagta
tRNA gene sequence
GGGGCTGTAGTCTAGCCAGGACTAGGATGCCAGCCTGGGGCGCTGGTGGTCCCGGGTTCA
AATCCCGGCAGCCCCAttg
Downstream region at tRNA end position
tggggatacc
Secondary structure (Cloverleaf model)
>A178000715	Pro	GGG
                   a      Attg tggggatacc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     T - A
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  A         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C T A        G     TGGTC
                    C - G
                    C - G
                    A - T
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
intron: position=38, length=21 (in A-loop)
ATAATTCCCTAACCACCAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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