The detailed information of tRNA gene sequence


Sequence ID>A179000011
Genome IDCP000852
Search identical group
Phylum/ClassThermoproteota
SpeciesCaldivirga maquilingensis IC-167 [CP000852]
Start position on genome 1320742
End posion on genome 1320652
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
caataggaag
tRNA gene sequence 
GGGCCCGTAGTCTAGCCTGGTTAGGATGTCCGCCTTACGAGCGGGAGATCCCGGGTTCAA
GTCCCGGCGGGCCCActa
Downstream region at tRNA end position 
gaataaacta
Secondary structure (Cloverleaf model)
>A179000011	Val	TAC
                   g      Acta gaataaacta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T G
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     AGATC
                    T + G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G *
                    T A C
intron: position=38, length=16 (in A-loop)
GGCATAACGCCAAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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