The detailed information of tRNA gene sequence


Sequence ID>A179000034
Genome IDCP001014
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum neutrophilum V24Sta [CP001014]
Start position on genome 1744634
End posion on genome 1744533
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aggtgaggta
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTCGAGATCCCGTCCCCGTCAAGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position 
agccgcttaa
Secondary structure (Cloverleaf model)
>A179000034	Ser	CGA
                   a      GCCA agccgcttaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTCAAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C G A
intron: position=38, length=14 (in A-loop)
GGCGCGTCCGAGCT
Intron
Comment/Decision
Genome/Seq. Info.-

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