The detailed information of tRNA gene sequence


Sequence ID>A179000045
Genome IDCP001140
Search identical group
Phylum/ClassThermoproteota
SpeciesDesulfurococcus amylolyticus 1221n [CP001140]
Start position on genome 1158224
End posion on genome 1158121
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position
gataatgggt
tRNA gene sequence
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCGCCCTTGCAAGGCGGAGGTCCCGGGTTCAAG
TCCCGGCCGGTCCActt
Downstream region at tRNA end position
tacacatcac
Secondary structure (Cloverleaf model)
>A179000045	Ala	TGC
                   t      Actt tacacatcac
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T G
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    T G C
intron: position=38, length=30 (in A-loop)
TGGCTTCCAGGCTGCACCGAGGTCGAGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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