The detailed information of tRNA gene sequence


Sequence ID>A179000050
Genome IDCP001338
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosphaerula palustris E1-9c [CP001338]
Start position on genome 1060884
End posion on genome 1061034
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
acctgcaccg
tRNA gene sequence 
GGGGTCGTGGCCTAGTCCGGAATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCAAA
TCTCACCGACCCCAcgt
Downstream region at tRNA end position 
ttttcaacga
Secondary structure (Cloverleaf model)
>A179000050	Trp	CCA
                   g      Acgt ttttcaacga
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C A C T C     A
      T G A        G      | | | | |     A
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=77 (in A-loop)
CGGTCTTGTGCGTGTGATGAACAATGGGTCTGCTGAATTGGTGATGACCCGTTGGAGCTCTGACGCATAT
CGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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