The detailed information of tRNA gene sequence


Sequence ID>A179000053
Genome IDCP001398
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
Start position on genome 1234378
End posion on genome 1234271
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ctcgggccgt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAGAGCGCTCGGCTCATAACCGAGAGGTCCGGGGTTCAA
AGCCCCGCCCCGGCACCA
Downstream region at tRNA end position 
cagaaacttt
Secondary structure (Cloverleaf model)
>A179000053	Met	CAT
                   t      ACCA cagaaacttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     A
  T         T T C G       C G G G G     C
  G         + | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
GGGCCGCTCCCCTTCGGGGGAGCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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