The detailed information of tRNA gene sequence


Sequence ID>A179000127
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1149356
End posion on genome 1149251
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
ttctgttaga
tRNA gene sequence 
GGGCCGGTAGCTCAGCCTGGAAGAGCGCCGCCCTTGCAAGGCGGAGGACCCGGGTTCAAA
TCCCGGCCGGTCCActc
Downstream region at tRNA end position 
aacaattcca
Secondary structure (Cloverleaf model)
>A179000127	Ala	TGC
                   a      Actc aacaattcca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     AGGAC
                    C - G
                    C - G
                    G - C
                    C - G
                    C - G
                  C       A
                  T       A *
                    T G C
intron: position=38, length=32 (in A-loop)
TGGCCTAAGGGGGCGCGACCGAGGTCGAGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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