The detailed information of tRNA gene sequence


Sequence ID>A179000129
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 1079185
End posion on genome 1079078
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gtttaaatag
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGTCTAAGGGGGTGGGCTCGAGACCCACTGCCCCCTCTGGGGCA
CGCGGGTTCGAATCCCGCCCCCGGCGcta
Downstream region at tRNA end position 
ctcctttcat
Secondary structure (Cloverleaf model)
>A179000129	Ser	CGA
                   g      Gcta ctcctttcat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    T       A G G G
      C T A        G     TGCCCCCTCTGGGGCAC
                    G - C
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
intron: position=38, length=22 (in A-loop)
ACTTCCGGCATCTCCCCGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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