The detailed information of tRNA gene sequence


Sequence ID>A179000139
Genome IDCP001941
Search identical group
Phylum/ClassUnclassified
SpeciesAciduliprofundum boonei T469 [CP001941]
Start position on genome 1181314
End posion on genome 1181193
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
tctttgcatg
tRNA gene sequence 
GCCGGGATAGGGTAGGGGCTATCCTAGGGGACTGTGGATCCCTTGACCCGGGTTCAAATC
CCGGTCCCGGCCctg
Downstream region at tRNA end position 
atatgaatat
Secondary structure (Cloverleaf model)
>A179000139	His	GTG
                   g      Cctg atatgaatat
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
      G G A        A      | | | | |     A
    G       T G G G       C C G G G     C
    G         | | +                 T T
    C       T C C T
      T A          A     TGAC
                    G + T
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    G T G
intron: position=38, length=50 (in A-loop)
AAAAGCCCCTTTAAAAAAGGTGCTTTACCCCTAAAAGGAGCTTTGTGGCA
Intron
Comment/Decision
Genome/Seq. Info.-

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