The detailed information of tRNA gene sequence


Sequence ID>A179000172
Genome IDCP002098
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnisphaera aggregans DSM 17230 [CP002098]
Start position on genome 888837
End posion on genome 888744
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
agatgtttta
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGATAGAGCGCCGGCCTCCTAAGCCGGTGGTCGGGGGTTCGA
ATCCCCCCGGGCCCGCCA
Downstream region at tRNA end position 
cacaacacag
Secondary structure (Cloverleaf model)
>A179000172	Arg	CCT
                   a      GCCA cacaacacag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G G G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     TGGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    C C T
intron: position=38, length=16 (in A-loop)
AAGATAGATCCAGGGA
Intron
Comment/Decision
Genome/Seq. Info.-

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