The detailed information of tRNA gene sequence


Sequence ID>A179000262
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 1803868
End posion on genome 1803965
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
tatgatccat
tRNA gene sequence 
GCGGGGGTGCCCGAGCATGGTCAAAGGGGGTAGGCTCAGGCCCTACTGGAGTAGTCCTGC
GCGGGTTCAAATCCCGCCCCCCGCAcgt
Downstream region at tRNA end position 
taaaaagcta
Secondary structure (Cloverleaf model)
>A179000262	Leu	CAG
                   t      Acgt taaaaagcta
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
    A C G A        G      | | | | |     A
  T         G C C C       G C G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGAGTAGTCCTGC
                    G - C
                    T - A
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G *
                    C A G
intron: position=38, length=13 (in A-loop)
ACCTTAGTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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