The detailed information of tRNA gene sequence


Sequence ID>A179000295
Genome IDCP002916
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasmatales archaeon BRNA1 [CP002916]
Start position on genome 1186302
End posion on genome 1186195
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
ccaaaacaac
tRNA gene sequence 
GCCGGGATGGCTCAGCCTGGTAGAGCGTCGGACTCATAATCCGAAGGCCGAGGGTTCGAA
CCCCTCTCCCGGCACCA
Downstream region at tRNA end position 
tattctcggt
Secondary structure (Cloverleaf model)
>A179000295	Met	CAT
                   c      ACCA tattctcggt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          C A
                    T     C T C C C     A
      C G A        G      | | | | |     G
    C       C T C G       G A G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGCC
                    T - A
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A *
                    C A T
intron: position=38, length=31 (in A-loop)
GGGTTCAGGTTATACTGACCTCACCAGGGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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