The detailed information of tRNA gene sequence


Sequence ID>A179000314
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 2267674
End posion on genome 2267765
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
gcgtagacgg
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGGCCTTCTAAGCCGTAGGTCGTGGGTTCAA
ATCCCATCGGGCCCGCCA
Downstream region at tRNA end position 
gtattctcat
Secondary structure (Cloverleaf model)
>A179000314	Arg	TCT
                   g      GCCA gtattctcat
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C C G A        A      + | | | |     A
  T         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=14 (in A-loop)
AGCTCGCCGAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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