The detailed information of tRNA gene sequence


Sequence ID>A179000317
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 1734130
End posion on genome 1734039
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
tatatgtaaa
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
ctctcctatt
Secondary structure (Cloverleaf model)
>A179000317	Ala	CGC
                   a      ACCA ctctcctatt
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G *
                    C G C
intron: position=38, length=17 (in A-loop)
CGGTGTTCCCCCGGGCA
Intron
Comment/Decision
Genome/Seq. Info.-

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