The detailed information of tRNA gene sequence


Sequence ID>A179000318
Genome IDCP003098
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum ferrireducens 1860 [CP003098]
Start position on genome 1467327
End posion on genome 1467239
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
aacagagacg
tRNA gene sequence 
AGCGGGGTAGGCCAGCCTGGTAGGCCGCGGGGCTCATAGCCCCGAGGTCCCCGGTTCAAA
TCCGGGCCCCGCTActa
Downstream region at tRNA end position 
ttgacattct
Secondary structure (Cloverleaf model)
>A179000318	Met	CAT
                   g      Acta ttgacattct
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G G C C     A
      C G A        A      | | | | |     A
    C       C C G G       C C C G G     C
    T       | | | |                 T T
    G       G G C C
      G T A        G     AGGTC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       G
                  T       A *
                    C A T
intron: position=38, length=15 (in A-loop)
ACGGAGATCCGTGGA
Intron
Comment/Decision
Genome/Seq. Info.-

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