The detailed information of tRNA gene sequence


Sequence ID>A179000333
Genome IDCP003117
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothrix harundinacea 6Ac [CP003117]
Start position on genome 1083320
End posion on genome 1083232
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gctcgcgcga
tRNA gene sequence 
GGACTCGTAGGGTAGAGGATATCCTAGCGGGCTTCGGACCCGCTGACCTGGGTTCGAATC
CCAGCGGGTCCGtcc
Downstream region at tRNA end position 
tccttttata
Secondary structure (Cloverleaf model)
>A179000333	Arg	TCG
                   a      Gtcc tccttttata
                     G - C
                     G - C
                     A - T
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G A C C C     A
      A G A        A      | | | | |     G
    G       T G G G       C T G G G     C
    G         | | +                 T T
    A       T C C T
      T A          A     TGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    T C G
intron: position=38, length=17 (in A-loop)
AGAGGCTCCTCGAAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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