The detailed information of tRNA gene sequence


Sequence ID>A179000396
Genome IDCP003651
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus cleftensis CL1 [CP003651]
Start position on genome 1166785
End posion on genome 1166646
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
taagccggac
tRNA gene sequence 
GGGGGCGTGGTGTAGCCTGGTCCATCATCGCGGGCTCCAGACCCGCGGACCGGGGTTCAA
ATCCCCGCGCCCCCACCA
Downstream region at tRNA end position 
ttgaaacttt
Secondary structure (Cloverleaf model)
>A179000396	Trp	CCA
                   c      ACCA ttgaaacttt
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        G      | | | | |     A
  T         T G T G       C G G G G     C
  G           | | +                 T T
  G         T C A T
    T C C A        C     GGAC
                    G - C
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
intron: position=38, length=62 (in A-loop)
AGGTATGAGGACTTGCGGGTTTGCTGATTGGGGATGAGCCTTTGGAGCTCTGACCCGGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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