The detailed information of tRNA gene sequence


Sequence ID>A179000405
Genome IDCP003843
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrosopumilus sediminis AR2 [CP003843]
Start position on genome 339387
End posion on genome 339488
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
caagacttgt
tRNA gene sequence 
GCCGGGGTCGCCTAGCCTGGTAGGGCGCGCGCCTGGAAAGCGCGTTCTCGCAAGGGAACG
GGAGTTCAAATCTCCCTCCCGGCGCCA
Downstream region at tRNA end position 
ttttttaaag
Secondary structure (Cloverleaf model)
>A179000405	Ser	GGA
                   t      GCCA ttttttaaag
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G + T          T A
                    T     C C C T C     A
      C G A        C      | | | | |     A
    C       T C C G       G G G A G     C
    T       + | | |                 T T
    G       G G G C
      G T A        G     TTCTCGCAAGGGAAC
                    C - G
                    G - C
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A *
                    G G A
intron: position=38, length=15 (in A-loop)
ATTGTTTAACCATAA
Intron
Comment/Decision
Genome/Seq. Info.-

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