The detailed information of tRNA gene sequence


Sequence ID>A179000526
Genome IDCP009524
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina sp. Kolksee [CP009524]
Start position on genome 4260924
End posion on genome 4261039
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
taaacattgt
tRNA gene sequence 
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAGTC
TGGGAGGCGGGAcct
Downstream region at tRNA end position 
aaacaatttc
Secondary structure (Cloverleaf model)
>A179000526	Tyr	GTA
                   t      Acct aaacaatttc
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T G
                    T     G G G T C     A
        G A        A      | | | + |     G
      T     C T C A       C C C G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
intron: position=38, length=44 (in A-loop)
TTCGGCTCGTGCGGGTAAAATTACCCGTACATTTCCGCGCAGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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