The detailed information of tRNA gene sequence


Sequence ID>A179000609
Genome IDCP012172
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula ARS50-1 [CP012172]
Start position on genome 53471
End posion on genome 53566
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position
atagttaagt
tRNA gene sequence
GCCGGGGTGCCCGAGCGGACCAAGGGGCTGGCCTTGAGAGCCAGTAGGGAACTCCCTGCG
CGGGTTCAAATCCCGCCCCCGGCGtct
Downstream region at tRNA end position
ggaatccttt
Secondary structure (Cloverleaf model)
>A179000609	Ser	TGA
                   t      Gtct ggaatccttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     A
    G       G C C C       G C G G G     C
    G         | | |                 T T
    A       A G G G
      C C A        G     TAGGGAACTCCCTGC
                    C - G
                    T - A
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G *
                    T G A
intron: position=38, length=12 (in A-loop)
AGCTTCCTGGTT
Intron
Comment/Decision
Genome/Seq. Info.-

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