The detailed information of tRNA gene sequence


Sequence ID>A179000617
Genome IDCP012173
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula ARS50-2 [CP012173]
Start position on genome 117570
End posion on genome 117473
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
agggtaaaac
tRNA gene sequence
AGCGGCGTAGGCCAGCCTGGTAGGCCGCAGGGCTCATAACCCTGAGGTCCCTGGTTCAAG
TCCAGGCGCCGCTActt
Downstream region at tRNA end position
cccctacctc
Secondary structure (Cloverleaf model)
>A179000617	Met	CAT
                   c      Actt cccctacctc
                     A - T
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C          T G
                    T     G G A C C     A
      C G A        A      | | | | |     A
    C       C C G G       C C T G G     C
    T       | | | |                 T T
    G       G G C C
      G T A        G     AGGTC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=24 (in A-loop)
TATGGGTGTAAAACCCGTTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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