The detailed information of tRNA gene sequence


Sequence ID>A172000012
Genome IDCP001939
Search identical group
Phylum/ClassThermoproteota
SpeciesThermosphaera aggregans DSM 11486 [CP001939]
Start position on genome 892716
End posion on genome 892626
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
gattgaagca
tRNA gene sequence 
GGGCCCGTTGCCTAGCCAGGATAGGGCGCCGGCCTTCTAAGCCGGAGGCCCGGGGTTCGA
ATCCCCGCGGGCCCGctt
Downstream region at tRNA end position 
cacgaaacta
Secondary structure (Cloverleaf model)
>A172000012	Arg	TCT
                   a      Gctt cacgaaacta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C C G A        T      | | | | |     G
  A         T C C G       C G G G G     C
  G         + | | |                 T T
  G         G G G C
    A T A          G     AGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=16 (in A-loop)
AGTAGGCTCCGGAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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