The detailed information of tRNA gene sequence


Sequence ID>A172000035
Genome IDCP006867
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus islandicus DSM 13165 [CP006867]
Start position on genome 410664
End posion on genome 410570
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
gaacaaatgg
tRNA gene sequence
GGCCCCGTCGCCTAGCCAGGACAGGGCGCCGGCCTTCTAAGCCGGTAGTCCCGGGTTCAA
ATCCCGGCGGGGCCGcca
Downstream region at tRNA end position
aacacctaaa
Secondary structure (Cloverleaf model)
>A172000035	Arg	TCT
                   g      Gcca aacacctaaa
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  A         T C C G       C C G G G     C
  G         + | | |                 T T
  G         G G G C
    A C A          G     TAGTC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=20 (in A-loop)
AGCCCTACGGATTCGAGGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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