The detailed information of tRNA gene sequence


Sequence ID>A178000182
Genome IDCP002408
Search identical group
Phylum/ClassNitrososphaerota
SpeciesCandidatus Nitrososphaera gargensis Ga9.2 [CP002408]
Start position on genome 1613716
End posion on genome 1613626
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position 
tttcctgagc
tRNA gene sequence 
GGGCTCGTAGCTCAGCATGGATAGAGCGCCTGCCTTCTAAGCCGGAAGTCGTGGGATCGA
AGCCCACCGGGCCCGCta
Downstream region at tRNA end position 
ccttttggta
Secondary structure (Cloverleaf model)
>A178000182	Arg	TCT
                   c      GCta ccttttggta
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          G A
                    T     C A C C C     A
    A C G A        A      | | | | |     G
  T         C T C G       G T G G G     C
  G         | | | |                 A T
  G         G A G C
    A T A          G     AAGTC
                    C - G
                    C - G
                    T   C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C T
intron: position=38, length=15 (in A-loop)
AATTCTATTGAAGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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