The detailed information of tRNA gene sequence


Sequence ID>A178000276
Genome IDCP002838
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrolobus fumarii 1A [CP002838]
Start position on genome 757742
End posion on genome 757625
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
atacctcggt
tRNA gene sequence 
GCCGGGGTGCCCGAGCGGCCCAAGGGGGTGGGCTCGAGACCCACTGCCCCGTGCAGGGGC
GCGCGGGTTCGAATCCCGCCCCCGGCGCCA
Downstream region at tRNA end position 
ctctccttca
Secondary structure (Cloverleaf model)
>A178000276	Ser	CGA
                   t      GCCA ctctccttca
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G C G G G     C
    G         | | |                 T T
    C       A G G G
      C C A        G     TGCCCCGTGCAGGGGCGC
                    G - C
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C G A
intron: position=38, length=28 (in A-loop)
ACCTTTTCCGGCTACGAGAGGGTGGGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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