The detailed information of tRNA gene sequence


Sequence ID>A178000467
Genome IDCP009508
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina siciliae C2J [CP009508]
Start position on genome 3422878
End posion on genome 3422783
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gcggcactgC
tRNA gene sequence 
GGGCTCGTGGGGTAGCCAGGATATCCTAATGGGCTTCGAACCCATTGACTCGTGTTCGAA
TCGCGGCGGGCCCGTta
Downstream region at tRNA end position 
atctactttt
Secondary structure (Cloverleaf model)
>A178000467	Arg	TCG
                   C      GTta atctactttt
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     G G C G C     A
    C C G A        G      + | | + |     G
  A         T G G G       T C G T G     C
  G           | | +                 T T
  G         T C C T
    A T A          A     TGAC
                    A - T
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    T C G
intron: position=38, length=20 (in A-loop)
AGTAAGATTTTTACGAAGAT
Intron
Comment/Decision
Genome/Seq. Info.-

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