The detailed information of tRNA gene sequence


Sequence ID>A179000348
Genome IDCP003316
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum oguniense TE7 [CP003316]
Start position on genome 2423593
End posion on genome 2423500
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position
aaggattaca
tRNA gene sequence
GCCGCCGTAGCTCAGCCTGGAAGAGCGCTCGGCTCATAACCGGGTTGCCCCGGGTTCAAA
TCCCGGCGGCGGCAtct
Downstream region at tRNA end position
ttactgcacc
Secondary structure (Cloverleaf model)
>A179000348	Met	CAT
                   a      Atct ttactgcacc
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G A A        G     TTGCC
                    C - G
                    T + G
                   *C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    C A T
intron: position=30, length=20
TGGGGCGAAGCCCCGCGTAC
Intron
Comment/Decision
Genome/Seq. Info.-

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