The detailed information of tRNA gene sequence


Sequence ID>A17A000497
Genome IDCP002372
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus barophilus MP [CP002372]
Start position on genome 913884
End posion on genome 913988
Amino Acid Met
Anticodon CAT
Upstream region at tRNA start position 
atgcgggcgt
tRNA gene sequence 
GCCGGGGTAGCTTAGCCTGGTCAAAGCGCCCGGCTCATAACCGGGAGATCCGGGGTTCGA
AGCCCCGCCCCGGCAcca
Downstream region at tRNA end position 
taacaaactt
Secondary structure (Cloverleaf model)
>A17A000497	Met	CAT
                   t      Acca taacaaactt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          G A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         T T C G       C G G G G     C
  G         | | | |                 T T
  G         A A G C
    T C A          G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    C A T
intron: position=38, length=30 (in A-loop)
GGGCGACTCCCCTTCGGGGGAGCCTGAGAA
Intron
Comment/Decision
Genome/Seq. Info.-

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