The detailed information of tRNA gene sequence


Sequence ID>A17A000577
Genome IDCP002656
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera cuprina Ar-4 [CP002656]
Start position on genome 1192945
End posion on genome 1192857
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
gattcatgat
tRNA gene sequence 
GCCGCGGTAGTATAGCCCGGTCAAGTATGCAGGCCTCTCAAGCCTGTGGCCCGGGTTCAA
ATCCCGGCCGCGGCAcca
Downstream region at tRNA end position 
ctttttaaca
Secondary structure (Cloverleaf model)
>A17A000577	Glu	CTC
                   t      Acca ctttttaaca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    T C A A        G     TGGC
                    C - G
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C T C
intron: position=21, length=14 (in D-loop)
AGTTAGACGCCGAG
Intron
Comment/Decision
Genome/Seq. Info.-

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