The detailed information of tRNA gene sequence


Sequence ID>A17A001216
Genome IDCP009501
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanosarcina thermophila TM-1 [CP009501]
Start position on genome 2444032
End posion on genome 2443917
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tatacatcgt
tRNA gene sequence 
CCCGCCTTAACTCAGTGGTAGAGTGCGCGGCTGTAGACCGCGATGTCCCCGGTTCGAGTC
TGGGAGGCGGGAcct
Downstream region at tRNA end position 
gaaacattta
Secondary structure (Cloverleaf model)
>A17A001216	Tyr	GTA
                   t      Acct gaaacattta
                     C - G
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     T - A          T G
                    T     G G G T C     A
        G A        A      | | | + |     G
      T     C T C A       C C C G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     ATGTC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G *
                    G T A
intron: position=38, length=44 (in A-loop)
TTCGGCTCGTGCGGGTAAATTTACCCGTACATTTCCGCGCAGGC
Intron
Comment/Decision
Genome/Seq. Info.-

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