The detailed information of tRNA gene sequence


Sequence ID>CL00006
Genome IDCP000117
Search identical group
Phylum/ClassCyanobacteriota
SpeciesTrichormus variabilis ATCC 29413 [CP000117]
Start position on genome 2571790
End posion on genome 2571454
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
aagacaacgg
tRNA gene sequence 
GGGGGTGTGGCGGAATGGTAGACGCTACGGACTTAAAATCCGTTGACCTTAAACGGTCGT
GTGGGTTCAAGTCCCTCCACCCCCATAA
Downstream region at tRNA end position 
gagcaagtta
Secondary structure (Cloverleaf model)
>CL00006	Leu	TAA
                   g      ATAA gagcaagtta
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     G - C          T G
                    T     C T C C C     A
      T A A        G      |   | | |     A
    G       G G C G       G T G G G     C
    G         | | |                 T T
    T       A C G C
      A G          T     TGACCTTAAACGGTCGT
                    A - T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T*A A
intron: position=35, length=249 (in A-loop)
AAATAATTGAGCCTTAAAGAAGAAATTCTTTAAGTGGATGCTCTCAAACTCAGGGAAACCTAAATCTAGT
TATAGACAAGGCAATCCTGAGCCAAGCCGAAGTAGTAATTAGTAAGTTAACAATAGATGACTTACAACTA
ATCGGAAGGTGCAGAGACTCGACGGGAGCTACCCTAACGTCAAGACGAGGGTAAAGAGAGAGTCCAATTC
TCAAAGCCAATAGGCAGTAGCGAAAGCTGCAAGAGAATG
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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