The detailed information of tRNA gene sequence


Sequence ID>w020855
Genome IDAAVE01000002
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesDinoroseobacter shibae DFL 12 [AAVE]
Start position on genome 209995
End posion on genome 209904
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
acccgtcggC
tRNA gene sequence 
GGAGACGTGGCCGAGTGGTCGAAGGCGCTCCCCTGCTAAGGGAGTAGGCGGGAAACCGTC
TCGTGGGTTCGAATCCCATCGTCTCCGCCA
Downstream region at tRNA end position 
Cttgccctag
Secondary structure (Cloverleaf model)
>w020855	Ser	GCT
                   C      GCCA Cttgccctag
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     C - G
                     G - C          T A
                    T     T A C C C     A
      T G A        G      + | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TAGGCGGGAAACCGTCTC
                    C - G
                    T - A
                    C - G
                    C - G
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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