The detailed information of tRNA gene sequence


Sequence ID>WENV180039377
Genome IDLLBY010060894
Search identical group
Phylum/Class[LLBY] soil metagenome; soil from tomato rhizosphere
Species
Start position on genome 2970
End posion on genome 2876
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
agatattcgt
tRNA gene sequence 
GGAGAAGGAAGGTGCCCGGTGGCGCCGCTGGTCTTCAAAACCAGTCTGGAGGTCGTAAGA
TCCCCGGAGGGTTCGACTCCCTCCCTTCTCCGCCA
Downstream region at tRNA end position 
actaagagcg
Secondary structure (Cloverleaf model)
>WENV180039377	SeC	TCA
                   t      GCCA actaagagcg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C          T C
                    A     C T C C C     A
      C C C        A      | | | | |     G
    G       G T G G       G A G G G     C
    G       | + | |                 T T
    T       C G C C
      G G          G     TCTGGAGGTCGTAAGATCCCCG
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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