The detailed information of tRNA gene sequence


Sequence ID>WENV180044315
Genome IDMAVJ01000441
Search identical group
Phylum/Class[MAVJ] viral metagenome; RNA from tracheal sample collected at farm Nasib, Godhra
Species
Start position on genome 324
End posion on genome 235
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
tgatcgatcc
tRNA gene sequence 
GGAGGGGTGGCCGAGTGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGCCCGCAAGGGTA
CCGTGGGTTCGAATCCCACCCCTTCCGCCA
Downstream region at tRNA end position 
gtacactgtt
Secondary structure (Cloverleaf model)
>WENV180044315	Ser	TGA
                   c      GCCA gtacactgtt
                     G - C
                     G - C
                     A - T
                     G + T
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      T G A        G      | | | | |     G
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      T T A        A     CGTGCCCGCAAGGGTACC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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