The detailed information of tRNA gene sequence


Sequence ID>WENV180083112
Genome IDMPMD02017330
Search identical group
Phylum/Class[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
Species
Start position on genome 167
End posion on genome 264
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cctcgcccgc
tRNA gene sequence 
GGAGGCGCTTCCTACGCTGGTGCGGGGCCCGGTCTTCAAAACCGGTGGGCGGCGGGTTTC
CCGTCGTCGGTGGGTTCGATTCCCATGCGTCTCCGCCA
Downstream region at tRNA end position 
aaacacctgt
Secondary structure (Cloverleaf model)
>WENV180083112	SeC	TCA
                   c      GCCA aaacacctgt
                     G - C
                     G - C
                     A - T
                     G - C
                     G + T
                     C - G
                     G - C
                     C - G          T T
                    T     T A C C C     A
      C G C        T      + | | | |     G
    T       A T C C       G T G G G     C
    G         + | |                 T T
    G       G G G G
      T G C        C     TGGGCGGCGGGTTTCCCGTCGTCG
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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