The detailed information of tRNA gene sequence


Sequence ID>WENV180085451
Genome IDMPMD02327627
Search identical group
Phylum/Class[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
Species
Start position on genome 3397
End posion on genome 3496
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cagaacactg
tRNA gene sequence 
GGAAGTGTTTGCACACCTGGTGGTGGCCGCGGTCTTCAAAACCGTTGGGCGGTGCGTAAA
TCGTATTGCCAGTGGGTTCGATTCCCATACACTTCCGCCA
Downstream region at tRNA end position 
ttttggataa
Secondary structure (Cloverleaf model)
>WENV180085451	SeC	TCA
                   g      GCCA ttttggataa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     T - A          T T
                    T     T A C C C     A
      C C A        T      + | | | |     G
    T       C A C G       G T G G G     C
    G           | |                 T T
    G       T G G C
      T G G        C     TGGGCGGTGCGTAAATCGTATTGCCA
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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