The detailed information of tRNA gene sequence


Sequence ID>WENV180094484
Genome IDMTBK01010347
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 511
End posion on genome 413
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
taatcatagt
tRNA gene sequence 
GGAAGCGGATCGGTCCTGGTGGGTCGCCTGGACTTCAAATCCAGTTTGCGCGGCGGTGAT
CCCGTCGCGGGTGGGTTCGATTCCCACACGCTTCCGCCA
Downstream region at tRNA end position 
aattcttaaa
Secondary structure (Cloverleaf model)
>WENV180094484	SeC	TCA
                   t      GCCA aattcttaaa
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     G   A          T T
                    A     C A C C C     A
      T C C        T      | | | | |     G
    G       T G G C       G T G G G     C
    G       + + | |                 T T
    T       G T C G
      G G          C     TTTGCGCGGCGGTGATCCCGTCGCGG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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