The detailed information of tRNA gene sequence


Sequence ID>WENV180094569
Genome IDMTBK01015958
Search identical group
Phylum/Class[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
Species
Start position on genome 227
End posion on genome 317
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
acaaaatctc
tRNA gene sequence 
GGAAGGGTGGATGAGCGGTTTAAGTCGCACGCCTGGAAAGCGTGTTTAGGTGAATAACTT
AACGCGGGTTCGAATCCCGCCCCTTCCGCCA
Downstream region at tRNA end position 
tcaactagtt
Secondary structure (Cloverleaf model)
>WENV180094569	Ser	GGA
                   c      GCCA tcaactagtt
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G T A G       G C G G G     C
    G         + | |                 T T
    T       A G T C
      T T A        G     TTTAGGTGAATAACTTAAC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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